PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462867824
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family C3H
Protein Properties Length: 644aa    MW: 69127.4 Da    PI: 5.0097
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462867824genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH18.73.1e-064524671026
                GGTS--TTTTT-SS-SS CS
    zf-CCCH  10 artGtCkyGdrCkFaHg 26 
                   G C++Gd+CkF+H+
  462867824 452 VS-GKCSRGDKCKFSHV 467
                44.*************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010315.15388415IPR000571Zinc finger, CCCH-type
SMARTSM003560.015389414IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.09E-5389413IPR000571Zinc finger, CCCH-type
SMARTSM003569.5E-6417443IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.887417444IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.3E-4418442IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.03E-6419442IPR000571Zinc finger, CCCH-type
SMARTSM003560.038445468IPR000571Zinc finger, CCCH-type
PfamPF006422.0E-4447467IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.155447469IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 644 aa     Download sequence    Send to blast
MEDALVPPPD PVAATDAAVL TRRRSHLDSA SYRTLSRLFA HCFHLHPSRR EAPAPPEAEP  60
ATSKXXXXEF GDSPQAPEDA DFDRRKDVEK EAVSAGSSPR QETVSPVMDR PVLAKPTGVP  120
GETLQGSLED AGELFVKSTC SKAGDGGEEL GVDAGLLVED EALKSVKSCL EGEIDESMEA  180
VGHENGQLLD AMMTNFTGLI DDVGAGSVPE QSCAILGGEL QNIDEESKQL GDGVEEDGPA  240
GNSGYGKVDV GGFEEGEIEG ELQDLDAEES GDSEPADENA DGEEQGRDSV SKGSGANESC  300
DHDTRCGNVH LTPEMCATRA QAVSYDEVLD WNETPLPDDE DLKPGKKRKR NLTEERKAKK  360
TKNKRIKRAQ QRIAEGVHKL KLQPVIKPKE VKPCHFYNHG KCQQGDSCKF SHDFIPSTKS  420
KACKHFASGS CLKGDDCPFD HELLKYPCHK YVSGKCSRGD KCKFSHVLSS TDGTSTTDVK  480
KSDAPLAFGK TNLTGQAGSQ KTSSVHSGEP MISAPSKQQY SILKTLAGIS INSQGASTRI  540
PKGVQFLPFG RDGSNSSSVH QDLSAEKHRN ANGTRNQFAG HQAEGQKIVT QNDQKPVKPL  600
DVKDSLKEAT LPTDSTATPG SIHTQSEVSE ASRILQDFLF GVGS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004969019.10.0PREDICTED: zinc finger CCCH domain-containing protein 7
SwissprotQ657B31e-175C3H7_ORYSJ; Zinc finger CCCH domain-containing protein 7
TrEMBLK3XF830.0K3XF83_SETIT; Uncharacterized protein
STRINGSi000552m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP88383743
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G08505.27e-06C3H family protein